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| Item Type: | Article |
|---|---|
| Title: | CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data |
| Creators Name: | Bollen, S., Leddin, M., Andrade-Navarro, M.A. and Mah, N. |
| Abstract: | SUMMARY: The current methods available to detect chromosomal abnormalities from DNA microarray expression data are cumbersome and inflexible. CAFE has been developed to alleviate these issues. It is implemented as an R package that analyzes Affymetrix *.CEL files, and comes with flexible plotting functions, easing visualization of chromosomal abnormalities. AVAILABILITY: CAFE is available from https://bitbucket.org/cob87icW6z/cafe/ as both source and compiled packages for Linux and Windows. It is released under the GPL version 3 license. CAFE will also be freely available from Bioconductor. CONTACT: sander.h.bollen@gmail.com, nancy.mah@mdc-berlin.de. |
| Keywords: | Chromosome Aberrations, Gene Expression, Markov Chains, Oligonucleotide Array Sequence Analysis/methods, Software |
| Source: | Bioinformatics |
| ISSN: | 1367-4803 |
| Publisher: | Oxford University Press |
| Volume: | 30 |
| Number: | 10 |
| Page Range: | 1484-1485 |
| Date: | 15 May 2014 |
| Official Publication: | https://doi.org/10.1093/bioinformatics/btu028 |
| PubMed: | View item in PubMed |
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