CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data

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Item Type:	Article
Title:	CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data
Creators Name:	Bollen, S., Leddin, M., Andrade-Navarro, M.A. and Mah, N.
Abstract:	SUMMARY: The current methods available to detect chromosomal abnormalities from DNA microarray expression data are cumbersome and inflexible. CAFE has been developed to alleviate these issues. It is implemented as an R package that analyzes Affymetrix *.CEL files, and comes with flexible plotting functions, easing visualization of chromosomal abnormalities. AVAILABILITY: CAFE is available from https://bitbucket.org/cob87icW6z/cafe/ as both source and compiled packages for Linux and Windows. It is released under the GPL version 3 license. CAFE will also be freely available from Bioconductor. CONTACT: sander.h.bollen@gmail.com, nancy.mah@mdc-berlin.de.
Keywords:	Chromosome Aberrations, Gene Expression, Markov Chains, Oligonucleotide Array Sequence Analysis/methods, Software
Source:	Bioinformatics
ISSN:	1367-4803
Publisher:	Oxford University Press
Volume:	30
Number:	10
Page Range:	1484-1485
Date:	15 May 2014
Official Publication:	https://doi.org/10.1093/bioinformatics/btu028
PubMed:	View item in PubMed

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